Islandora update from GIT (HEAD)

List modules

drush pm-list

 Islandora                 U Islandora (islandora)                                                          Module  Enabled        7.x-dev
 Islandora                 _ Islandora Biological Entity (islandora_solution_pack_biological_entity)        Module  Disabled       7.x-1.x-dev
 Islandora                 _ Islandora Ontologies (islandora_ontologies)                                    Module  Enabled        7.x-0.1
 Islandora                 U Islandora Solr Metadata (islandora_solr_metadata)                              Module  Enabled        7.x-dev
 Islandora customizations  _ Islandora Relationship Editor (islandora_relationship_editor)                  Module  Disabled       7.x-0.1
 Islandora Dependencies    U Islandora XML Form API (xml_form_api)                                          Module  Disabled       7.x-dev
 Islandora Dependencies    U Islandora XML Form Elements (xml_form_elements)                                Module  Disabled       7.x-dev
 Islandora Dependencies    U Islandora XML Schema API (xml_schema_api)                                      Module  Disabled       7.x-dev
 Islandora Dependencies    U Objective Forms (objective_forms)                                              Module  Disabled       7.x-dev
 Islandora Dependencies    U PHP Lib (php_lib)                                                              Module  Disabled       7.x-dev
 Islandora Search          U Islandora Solr (islandora_solr)                                                Module  Enabled        7.x-dev
 Islandora Search          U Islandora Solr display profiles (islandora_solr_config)                        Module  Not installed  7.x-dev
 Islandora Search          U Islandora Solr Geographical display profile (islandora_solr_geo)               Module  Not installed  7.x-dev
 Islandora Solution Packs  U Islandora basic collection (islandora_basic_collection)                        Module  Enabled        7.x-dev
 Islandora Solution Packs  U Islandora Book Solution Pack (islandora_book)                                  Module  Enabled        7.x-dev
 Islandora Solution Packs  U Islandora compound object (islandora_compound_object)                          Module  Enabled
 Islandora Solution Packs  U Islandora Large Image Solution Pack (islandora_large_image)                    Module  Enabled        7.x-dev
 Islandora Solution Packs  U Islandora Paged Content (islandora_paged_content)                              Module  Enabled        7.x-dev
 Islandora Tools           U Islandora OCR (islandora_ocr)                                                  Module  Enabled        7.x-dev
 Islandora Tools           U Islandora Xacml Api (islandora_xacml_api)                                      Module  Enabled        7.x-dev
 Islandora Tools           U Islandora XACML Editor (islandora_xacml_editor)                                Module  Enabled        7.x-dev
 Islandora Tools           U Islandora XML Form Builder (xml_form_builder)                                  Module  Disabled       7.x-dev
 Islandora Tools           U Islandora XML Forms (xml_forms)                                                Module  Disabled       7.x-dev
 Islandora Viewers         U Islandora Internet Archive BookReader (islandora_internet_archive_bookreader)  Module  Enabled        7.x-dev
 Islandora Viewers         U Islandora OpenSeadragon (islandora_openseadragon)                              Module  Enabled        7.x-dev
 Other                     Colorbox (colorbox)                                                              Module  Enabled        7.x-2.8
 Other                     ImageMagick (imagemagick)                                                        Module  Enabled        7.x-1.0
 Other                     ImageMagick Advanced (imagemagick_advanced)                                      Module  Not installed  7.x-1.0
 Other                     Libraries (libraries)                                                            Module  Enabled        7.x-2.2

ls -l sites/all/modules/islandora/
total 72
drwxr-xr-x 11 root      root 4096 Jun 18 13:20 islandora
drwxr-xr-x  9 root      root 4096 Jun 18 14:29 islandora_internet_archive_bookreader
drwxr-xr-x  6 root      root 4096 Jun 18 14:10 islandora_ocr
drwxr-xr-x  8 root      root 4096 Jun 18 13:33 islandora_openseadragon
drwxr-xr-x 10 root      root 4096 Jun 18 14:07 islandora_paged_content
drwxr-xr-x  5 root      root 4096 Mar 17  2014 islandora_relationship_editor
drwxr-xr-x  6 root      root 4096 Jul 22 09:38 islandora_solr_metadata
drwxr-xr-x 13 root      root 4096 Jun 18 14:14 islandora_solr_search
drwxr-xr-x  9 root      root 4096 Apr 15  2014 islandora_solution_pack_biological_entity
drwxr-xr-x 10 root      root 4096 Jun 18 14:49 islandora_solution_pack_book
drwxr-xr-x 10 root      root 4096 Jun 18 13:26 islandora_solution_pack_collection
drwxr-xr-x  9 root      root 4096 Jul 21 15:30 islandora_solution_pack_compound
drwxr-xr-x 10 root      root 4096 Jun 18 13:38 islandora_solution_pack_large_image
drwxr-xr-x 13 giancarlo root 4096 Jul 24 09:34 islandora_solution_pack_ontologies-7.x-dev
drwxr-xr-x  8 root      root 4096 Jun 18 14:22 islandora_xacml_editor
drwxr-xr-x  8 root      root 4096 Apr 15  2014 islandora_xml_forms
drwxr-xr-x  5 root      root 4096 Apr 15  2014 objective_forms    * 
drwxr-xr-x  7 root      root 4096 Apr 15  2014 php_lib

ls -l sites/all/libraries/
total 20
drwxr-xr-x 6 root root 4096 Oct 30 11:04 bookreader
drwxr-xr-x 9 root root 4096 Oct  5 17:52 colorbox
drwxr-xr-x 8 root root 4096 Oct 30 11:31 JAIL
drwxr-xr-x 3 root root 4096 Jun 18 13:55 openseadragon
drwxr-xr-x 4 root root 4096 Oct 30 11:26 tuque

Backup

(1)
cd /usr/share/siteROOT/
drush archive-dump

(2)
drush vset --exact maintenance_mode 1

rm -R ~/islandora_modules_bck/*
rm -R ~/islandora_libraries_bck/*

cp -a sites/all/modules/islandora/* ~/islandora_modules_bck/
cp -a sites/all/libraries/* ~/islandora_libraries_bck/

NOTE: all Islandora modules installed in sites/all/modules/islandora/

Disable modules

(3)
drush dis islandora_solr_metadata
drush dis islandora_solr
drush dis islandora_basic_collection islandora_book islandora_compound_object islandora_large_image
drush dis islandora_ocr islandora_xacml_editor islandora_internet_archive_bookreader islandora_openseadragon
drush dis islandora_paged_content islandora_xacml_api
drush dis islandora

Update libraries

- openseadragon

cd ~
wget https://github.com/openseadragon/openseadragon/releases/download/v1.1.1/openseadragon-bin-1.1.1.tar.gz
tar -xvzf openseadragon-bin-1.1.1.tar.gz
rm -R /usr/share/siteRoot/sites/all/libraries/openseadragon
mv openseadragon-bin-1.1.1 /usr/share/siteRoot/sites/all/libraries/openseadragon

- bookreader

cd /usr/share/siteRoot/sites/all/libraries/
rm -R bookreader
git clone https://github.com/Islandora/internet_archive_bookreader.git
mv internet_archive_bookreader bookreader

- tuque

cd /usr/share/siteRoot/sites/all/libraries/
rm -R tuque
git clone https://github.com/Islandora/tuque.git

nano -w tuque/HttpConnection.php
    public $verifyPeer = FALSE;

- colorbox library plugin

cd /usr/share/siteRoot/sites/all/libraries/
rm -R colorbox
wget https://github.com/jackmoore/colorbox/archive/master.zip
unzip master.zip
rm master.zip
mv colorbox-master colorbox

- JAIL

cd /usr/share/siteRoot/sites/all/libraries/
rm -R JAIL
git clone git://github.com/sebarmeli/JAIL

Update modules

cd /usr/share/siteRoot/sites/all/modules/islandora/

- islandora

rm -R islandora
git clone git://github.com/Islandora/islandora
drush en islandora

- islandora_xacml_editor

rm -R islandora_xacml_editor
git clone git://github.com/Islandora/islandora_xacml_editor
drush en islandora_xacml_api
drush en islandora_xacml_editor

- islandora_paged_content

rm -R islandora_paged_content
git clone git://github.com/Islandora/islandora_paged_content
drush en islandora_paged_content

- islandora_openseadragon

rm -R islandora_openseadragon
git clone git://github.com/Islandora/islandora_openseadragon.git
drush en islandora_openseadragon

- islandora_internet_archive_bookreader

rm -R islandora_internet_archive_bookreader
git clone git://github.com/Islandora/islandora_internet_archive_bookreader

nano -w islandora_internet_archive_bookreader/includes/callback.inc

  if (!module_exists('islandora_solr')) {
    drupal_exit();
  }
+ $term = "OCR_t:".$term;
  $results = islandora_paged_content_perform_solr_highlighting_query($term, array(
    'fq' => array(format_string('!field:("info:fedora/!value" OR "!value")', array(
      '!field' => variable_get('islandora_internet_archive_bookreader_ocr_filter_field', 'RELS_EXT_isMemberOf_uri_ms'),
      '!value' => $object_id,
    ))),
    'hl.tag.pre' => '{{{',
    'hl.tag.post' => '}}}',
-   'defType' => 'dismax',


nano -w islandora_internet_archive_bookreader/theme/theme.inc

-  if ($viewer != 'dublin_core' && $metadata) {
+  if (($viewer == 'dublin_core') && ($metadata)) {

drush en islandora_internet_archive_bookreader

- islandora_ocr

rm -R islandora_ocr
git clone git://github.com/Islandora/islandora_ocr
drush en islandora_ocr

- islandora_solution_pack_collection

rm -R islandora_solution_pack_collection
git clone git://github.com/Islandora/islandora_solution_pack_collection
drush en islandora_basic_collection

REINSTALL OBJECT Islandora Collection Content Model [islandora:collectionCModel]

- islandora_solution_pack_large_image

rm -R islandora_solution_pack_large_image
git clone git://github.com/Islandora/islandora_solution_pack_large_image
drush en islandora_large_image

REINSTALL OBJECT Islandora Large Image Content Model [islandora:sp_large_image_cmodel]
Large Image Collection [islandora:sp_large_image_collection]
NOTE: viewer doesn't work in maintenance mode

- islandora_solution_pack_compound

rm -R islandora_solution_pack_compound
git clone git://github.com/Islandora/islandora_solution_pack_compound
drush en islandora_compound_object

REINSTALL OBJECT Compound Collection [islandora:compound_collection]

- islandora_solution_pack_book

rm -R islandora_solution_pack_book
git clone git://github.com/Islandora/islandora_solution_pack_book
drush en islandora_book

REINSTALL OBJECT Islandora Internet Archive Book Content Model [islandora:bookCModel]
Book Collection [islandora:bookCollection]

- islandora_solr_search

rm -R islandora_solr_search
git clone git://github.com/Islandora/islandora_solr_search
wget http://solr-php-client.googlecode.com/files/SolrPhpClient.r60.2011-05-04.zip
unzip SolrPhpClient.r60.2011-05-04.zip
cp -R SolrPhpClient/Apache/Solr/* islandora_solr_search/SolrPhpClient/Apache/Solr/
rm -R SolrPhpClient*
drush en islandora_solr

- islandora_solr_metadata

rm -R islandora_solr_metadata
git clone git://github.com/Islandora/islandora_solr_metadata
drush en islandora_solr_metadata

- php_lib

rm -R php_lib
git clone git://github.com/Islandora/php_lib

- objective_forms

rm -R objective_forms
git clone git://github.com/Islandora/objective_forms

- islandora_xml_forms

rm -R islandora_xml_forms
git clone git://github.com/Islandora/islandora_xml_forms